Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
B4V02_25250 | B4V02_25270 | GCA_001705305_01110 | GCA_001705305_01114 | Unannotated protein. | Unannotated protein; Belongs to the ParB family. | 0.438 |
B4V02_25250 | mnmE | GCA_001705305_01110 | GCA_001705305_01111 | Unannotated protein. | Unannotated protein; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. | 0.799 |
B4V02_25250 | mnmG | GCA_001705305_01110 | GCA_001705305_01112 | Unannotated protein. | Unannotated protein; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. | 0.731 |
B4V02_25250 | rnpA | GCA_001705305_01110 | GCA_001705305_01108 | Unannotated protein. | Unannotated protein; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.935 |
B4V02_25250 | rpmH | GCA_001705305_01110 | GCA_001705305_01107 | Unannotated protein. | Unannotated protein; Belongs to the bacterial ribosomal protein bL34 family. | 0.755 |
B4V02_25250 | rsmG | GCA_001705305_01110 | GCA_001705305_01113 | Unannotated protein. | Unannotated protein; Specifically methylates the N7 position of guanine in position 535 of 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family. | 0.881 |
B4V02_25250 | yidC | GCA_001705305_01110 | GCA_001705305_01109 | Unannotated protein. | Unannotated protein; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins; Belongs to the OXA1/ALB3/YidC family. Type 2 subfamily. | 0.966 |
B4V02_25270 | B4V02_25250 | GCA_001705305_01114 | GCA_001705305_01110 | Unannotated protein; Belongs to the ParB family. | Unannotated protein. | 0.438 |
B4V02_25270 | B4V02_25275 | GCA_001705305_01114 | GCA_001705305_01115 | Unannotated protein; Belongs to the ParB family. | Unannotated protein. | 0.974 |
B4V02_25270 | mnmE | GCA_001705305_01114 | GCA_001705305_01111 | Unannotated protein; Belongs to the ParB family. | Unannotated protein; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. | 0.633 |
B4V02_25270 | mnmG | GCA_001705305_01114 | GCA_001705305_01112 | Unannotated protein; Belongs to the ParB family. | Unannotated protein; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. | 0.624 |
B4V02_25270 | rsmG | GCA_001705305_01114 | GCA_001705305_01113 | Unannotated protein; Belongs to the ParB family. | Unannotated protein; Specifically methylates the N7 position of guanine in position 535 of 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family. | 0.887 |
B4V02_25270 | yidC | GCA_001705305_01114 | GCA_001705305_01109 | Unannotated protein; Belongs to the ParB family. | Unannotated protein; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins; Belongs to the OXA1/ALB3/YidC family. Type 2 subfamily. | 0.430 |
B4V02_25275 | B4V02_25270 | GCA_001705305_01115 | GCA_001705305_01114 | Unannotated protein. | Unannotated protein; Belongs to the ParB family. | 0.974 |
B4V02_25275 | GCA_001705305_01254 | GCA_001705305_01115 | GCA_001705305_01254 | Unannotated protein. | Unannotated protein. | 0.678 |
B4V02_25275 | mnmG | GCA_001705305_01115 | GCA_001705305_01112 | Unannotated protein. | Unannotated protein; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. | 0.471 |
B4V02_25275 | rsmG | GCA_001705305_01115 | GCA_001705305_01113 | Unannotated protein. | Unannotated protein; Specifically methylates the N7 position of guanine in position 535 of 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family. | 0.665 |
GCA_001705305_01254 | B4V02_25275 | GCA_001705305_01254 | GCA_001705305_01115 | Unannotated protein. | Unannotated protein. | 0.678 |
GCA_001705305_01254 | rsmG | GCA_001705305_01254 | GCA_001705305_01113 | Unannotated protein. | Unannotated protein; Specifically methylates the N7 position of guanine in position 535 of 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family. | 0.603 |
mnmE | B4V02_25250 | GCA_001705305_01111 | GCA_001705305_01110 | Unannotated protein; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family. | Unannotated protein. | 0.799 |
page 1 of 4