Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
B4V02_06240 | B4V02_08375 | GCA_001705305_02303 | GCA_001705305_05071 | Unannotated protein. | Unannotated protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.498 |
B4V02_06240 | B4V02_15590 | GCA_001705305_02303 | GCA_001705305_01879 | Unannotated protein. | Unannotated protein. | 0.664 |
B4V02_06240 | rnpA | GCA_001705305_02303 | GCA_001705305_01108 | Unannotated protein. | Unannotated protein; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.462 |
B4V02_08375 | B4V02_06240 | GCA_001705305_05071 | GCA_001705305_02303 | Unannotated protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | Unannotated protein. | 0.498 |
B4V02_08375 | B4V02_15590 | GCA_001705305_05071 | GCA_001705305_01879 | Unannotated protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | Unannotated protein. | 0.487 |
B4V02_08375 | rsmI | GCA_001705305_05071 | GCA_001705305_01466 | Unannotated protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | Unannotated protein; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | 0.496 |
B4V02_09570 | B4V02_15590 | GCA_001705305_03917 | GCA_001705305_01879 | Unannotated protein. | Unannotated protein. | 0.494 |
B4V02_09910 | B4V02_15590 | GCA_001705305_03977 | GCA_001705305_01879 | Unannotated protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | Unannotated protein. | 0.735 |
B4V02_09910 | rnpA | GCA_001705305_03977 | GCA_001705305_01108 | Unannotated protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | Unannotated protein; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.945 |
B4V02_15590 | B4V02_06240 | GCA_001705305_01879 | GCA_001705305_02303 | Unannotated protein. | Unannotated protein. | 0.664 |
B4V02_15590 | B4V02_08375 | GCA_001705305_01879 | GCA_001705305_05071 | Unannotated protein. | Unannotated protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.487 |
B4V02_15590 | B4V02_09570 | GCA_001705305_01879 | GCA_001705305_03917 | Unannotated protein. | Unannotated protein. | 0.494 |
B4V02_15590 | B4V02_09910 | GCA_001705305_01879 | GCA_001705305_03977 | Unannotated protein. | Unannotated protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | 0.735 |
B4V02_15590 | coaD | GCA_001705305_01879 | GCA_001705305_01878 | Unannotated protein. | Unannotated protein; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | 0.972 |
B4V02_15590 | def | GCA_001705305_01879 | GCA_001705305_03932 | Unannotated protein. | Unannotated protein; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.580 |
B4V02_15590 | der | GCA_001705305_01879 | GCA_001705305_04075 | Unannotated protein. | Unannotated protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.616 |
B4V02_15590 | pyrH | GCA_001705305_01879 | GCA_001705305_01798 | Unannotated protein. | Unannotated protein; Catalyzes the reversible phosphorylation of UMP to UDP. | 0.550 |
B4V02_15590 | rnpA | GCA_001705305_01879 | GCA_001705305_01108 | Unannotated protein. | Unannotated protein; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.572 |
B4V02_15590 | rsmI | GCA_001705305_01879 | GCA_001705305_01466 | Unannotated protein. | Unannotated protein; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | 0.471 |
coaD | B4V02_15590 | GCA_001705305_01878 | GCA_001705305_01879 | Unannotated protein; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | Unannotated protein. | 0.972 |
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