Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
B4V02_08695 | B4V02_08700 | GCA_001705305_05135 | GCA_001705305_05136 | Unannotated protein. | Unannotated protein. | 0.866 |
B4V02_08695 | B4V02_08705 | GCA_001705305_05135 | GCA_001705305_05137 | Unannotated protein. | Unannotated protein. | 0.806 |
B4V02_08695 | B4V02_08730 | GCA_001705305_05135 | GCA_001705305_05142 | Unannotated protein. | Unannotated protein; Belongs to the SEDS family. | 0.714 |
B4V02_08695 | B4V02_17880 | GCA_001705305_05135 | GCA_001705305_00156 | Unannotated protein. | Unannotated protein. | 0.779 |
B4V02_08695 | mraY | GCA_001705305_05135 | GCA_001705305_05140 | Unannotated protein. | Unannotated protein; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | 0.714 |
B4V02_08695 | mraZ | GCA_001705305_05135 | GCA_001705305_05133 | Unannotated protein. | Unannotated protein; Belongs to the MraZ family. | 0.905 |
B4V02_08695 | murD | GCA_001705305_05135 | GCA_001705305_05141 | Unannotated protein. | Unannotated protein; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.736 |
B4V02_08695 | murE | GCA_001705305_05135 | GCA_001705305_05138 | Unannotated protein. | Unannotated protein; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | 0.703 |
B4V02_08695 | murF | GCA_001705305_05135 | GCA_001705305_05139 | Unannotated protein. | Unannotated protein; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | 0.735 |
B4V02_08695 | rsmH | GCA_001705305_05135 | GCA_001705305_05134 | Unannotated protein. | Unannotated protein; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. | 0.960 |
B4V02_08700 | B4V02_08695 | GCA_001705305_05136 | GCA_001705305_05135 | Unannotated protein. | Unannotated protein. | 0.866 |
B4V02_08700 | B4V02_08705 | GCA_001705305_05136 | GCA_001705305_05137 | Unannotated protein. | Unannotated protein. | 0.982 |
B4V02_08700 | B4V02_08730 | GCA_001705305_05136 | GCA_001705305_05142 | Unannotated protein. | Unannotated protein; Belongs to the SEDS family. | 0.957 |
B4V02_08700 | B4V02_17880 | GCA_001705305_05136 | GCA_001705305_00156 | Unannotated protein. | Unannotated protein. | 0.451 |
B4V02_08700 | mraY | GCA_001705305_05136 | GCA_001705305_05140 | Unannotated protein. | Unannotated protein; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | 0.931 |
B4V02_08700 | mraZ | GCA_001705305_05136 | GCA_001705305_05133 | Unannotated protein. | Unannotated protein; Belongs to the MraZ family. | 0.885 |
B4V02_08700 | murD | GCA_001705305_05136 | GCA_001705305_05141 | Unannotated protein. | Unannotated protein; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.948 |
B4V02_08700 | murE | GCA_001705305_05136 | GCA_001705305_05138 | Unannotated protein. | Unannotated protein; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | 0.943 |
B4V02_08700 | murF | GCA_001705305_05136 | GCA_001705305_05139 | Unannotated protein. | Unannotated protein; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | 0.954 |
B4V02_08700 | rsmH | GCA_001705305_05136 | GCA_001705305_05134 | Unannotated protein. | Unannotated protein; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. | 0.852 |
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