STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALL05707.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (425 aa)    
Predicted Functional Partners:
ALL05706.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
ALL05705.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.718
ALL05704.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.671
ALL05703.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.650
ALL06031.1
Metal-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.584
ALL05708.1
ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.462
ALL05657.1
Damage-inducible protein CinA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CinA family.
      
 0.438
ALL08763.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.432
Your Current Organism:
Pedobacter sp. PACM27299
NCBI taxonomy Id: 1727164
Other names: P. sp. PACM 27299, Pedobacter sp. PACM 27299
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.