STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AO396_00285Uncharacterized protein. (306 aa)    
Predicted Functional Partners:
AO394_01675
Uncharacterized protein.
  
 
 
 0.916
AO396_01905
Uncharacterized protein.
  
 0.877
AO394_01745
FlgD_ig domain-containing protein.
 
 
 0.788
purD
Phosphoribosylamine--glycine ligase; Belongs to the GARS family.
  
    0.788
panB
3-methyl-2-oxobutanoate hydroxymethyltransferase; Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha- ketoisovalerate to form ketopantoate; Belongs to the PanB family.
       0.773
AO394_00760
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center.
    
  0.768
AO396_02045
Uncharacterized protein.
 
     0.761
AO394_01680
Uncharacterized protein.
    
 
 0.755
AO396_03175
Uncharacterized protein.
  
     0.742
AO394_08835
OstA-like_N domain-containing protein.
  
     0.740
Your Current Organism:
Fermentibacter daniensis
NCBI taxonomy Id: 1729713
Other names: C. Fermentibacter daniensis, Candidatus Fermentibacter daniensis, candidate division Hyd24-12 bacterium Dam_1, candidate division Hyd24-12 bacterium Ran_1, candidate division Hyd24-12 bacterium Vib_1
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.