STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AO394_02785Glyco_trans_4-like_N domain-containing protein. (418 aa)    
Predicted Functional Partners:
AO396_01080
Aspartokinase; Belongs to the aspartokinase family.
 
     0.588
AO394_03895
Uncharacterized protein.
  
 
 0.574
AO394_02800
TPR_REGION domain-containing protein.
   
 
 0.569
AO394_02780
Uncharacterized protein.
       0.565
uppP
Undecaprenyl-diphosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.
       0.535
glgB
1,4-alpha-glucan branching enzyme GlgB; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
  0.517
AO394_05230
AMPK1_CBM domain-containing protein.
   
  0.517
AO394_05405
Bac_transf domain-containing protein.
 
 
 0.510
AO394_03025
Bac_transf domain-containing protein.
 
 
 0.477
AO396_04715
Bac_transf domain-containing protein.
 
 
 0.476
Your Current Organism:
Fermentibacter daniensis
NCBI taxonomy Id: 1729713
Other names: C. Fermentibacter daniensis, Candidatus Fermentibacter daniensis, candidate division Hyd24-12 bacterium Dam_1, candidate division Hyd24-12 bacterium Ran_1, candidate division Hyd24-12 bacterium Vib_1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.