STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AO394_07035Peptidase_M14 domain-containing protein. (485 aa)    
Predicted Functional Partners:
AO394_07045
HTH merR-type domain-containing protein.
  
    0.745
AO396_06930
Uncharacterized protein.
       0.741
AO396_06310
Uncharacterized protein.
  
     0.700
AO395_03045
annotation not available
  
   
 0.671
AO394_00530
Uncharacterized protein.
  
     0.668
AO394_00535
Uncharacterized protein.
  
     0.666
AO394_04005
Uncharacterized protein.
  
     0.650
AO396_08240
Peptidase_S8 domain-containing protein; Belongs to the peptidase S8 family.
  
     0.635
AO394_04490
Peptidase_S8 domain-containing protein; Belongs to the peptidase S8 family.
  
     0.588
AO394_05760
Uncharacterized protein.
  
     0.587
Your Current Organism:
Fermentibacter daniensis
NCBI taxonomy Id: 1729713
Other names: C. Fermentibacter daniensis, Candidatus Fermentibacter daniensis, candidate division Hyd24-12 bacterium Dam_1, candidate division Hyd24-12 bacterium Ran_1, candidate division Hyd24-12 bacterium Vib_1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.