STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AO394_03935D,D-heptose 1,7-bisphosphate phosphatase. (188 aa)    
Predicted Functional Partners:
AO394_05560
SIS domain-containing protein.
 
 
 0.973
AO394_03085
CTP_transf_like domain-containing protein.
  
 0.961
AO394_03940
UDP-glucose 4-epimerase.
    
 0.846
AO396_00440
NTP_transferase domain-containing protein.
 
 0.797
AO394_03965
Uncharacterized protein.
    
 0.777
AO394_03930
Uncharacterized protein.
       0.773
AO394_03080
PfkB domain-containing protein.
 
  
 0.749
AO394_05190
Uncharacterized protein.
 
  
 0.726
ddl
D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
    
 0.714
AO394_03895
Uncharacterized protein.
 
  
 0.701
Your Current Organism:
Fermentibacter daniensis
NCBI taxonomy Id: 1729713
Other names: C. Fermentibacter daniensis, Candidatus Fermentibacter daniensis, candidate division Hyd24-12 bacterium Dam_1, candidate division Hyd24-12 bacterium Ran_1, candidate division Hyd24-12 bacterium Vib_1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.