STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AO394_02670YkuD domain-containing protein. (150 aa)    
Predicted Functional Partners:
AO394_02665
TPR_REGION domain-containing protein.
 
  
  0.684
AO394_06850
Uncharacterized protein.
    
 0.573
AO394_01130
Uncharacterized protein.
     
 0.560
AO395_01825
annotation not available
     
 0.558
AO394_06365
MurNAc-LAA domain-containing protein.
     
 0.549
AO394_03805
Uncharacterized protein.
     
 0.540
AO394_10655
Uncharacterized protein.
    
 0.539
AO396_07435
Uncharacterized protein.
     
 0.529
AO394_06720
Uncharacterized protein.
     
 0.500
AO394_00995
Uncharacterized protein.
     
 0.500
Your Current Organism:
Fermentibacter daniensis
NCBI taxonomy Id: 1729713
Other names: C. Fermentibacter daniensis, Candidatus Fermentibacter daniensis, candidate division Hyd24-12 bacterium Dam_1, candidate division Hyd24-12 bacterium Ran_1, candidate division Hyd24-12 bacterium Vib_1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.