STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AO394_05120Uncharacterized protein. (654 aa)    
Predicted Functional Partners:
AO394_05125
ABC transporter ATP-binding protein.
 
 
 0.974
AO394_05130
Uncharacterized protein.
 
 
 
0.934
AO394_00420
Uncharacterized protein.
  
 
 0.722
AO396_05260
ABC transporter domain-containing protein.
  
 
 0.722
AO394_00255
ABC transporter domain-containing protein.
  
 
 0.722
AO394_08100
ABC transporter domain-containing protein.
  
 
 0.722
AO396_05840
Peptidase_M1 domain-containing protein.
 
     0.544
AO394_05135
Cyclic nucleotide-binding domain-containing protein.
       0.507
AO394_05140
MFS domain-containing protein.
       0.506
AO394_05170
PMT_2 domain-containing protein.
 
     0.435
Your Current Organism:
Fermentibacter daniensis
NCBI taxonomy Id: 1729713
Other names: C. Fermentibacter daniensis, Candidatus Fermentibacter daniensis, candidate division Hyd24-12 bacterium Dam_1, candidate division Hyd24-12 bacterium Ran_1, candidate division Hyd24-12 bacterium Vib_1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.