KPN19043.1 protein (Arthrobacter sp. Edens01)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KPN19043.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (149 aa)

Predicted Functional Partners:

KPN18954.1

0.978

KPN17746.1

0.786

KPN17747.1

0.718

rbpA

0.708

KPN16436.1

0.678

KPN18894.1

0.666

KPN18966.1

0.638

KPN18584.1

0.629

KPN22108.1

0.627

KPN21839.1

0.601

Your Current Organism:

Arthrobacter sp. Edens01

NCBI taxonomy Id: 1732020
Other names: A. sp. Edens01

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KPN16436.1	KPN18584.1	AO716_16370	AO716_12395	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	dUTPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.475
KPN16436.1	KPN18894.1	AO716_16370	AO716_14165	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	dUTPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.546
KPN16436.1	KPN19043.1	AO716_16370	AO716_07210	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.678
KPN16436.1	KPN21839.1	AO716_16370	AO716_02165	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	dUTPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.478
KPN16436.1	KPN22108.1	AO716_16370	AO716_03690	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.559
KPN16436.1	rbpA	AO716_16370	AO716_12425	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.	0.592
KPN17746.1	KPN17747.1	AO716_07215	AO716_07220	Exopolyphosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase S8; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S8 family.	0.884
KPN17746.1	KPN19043.1	AO716_07215	AO716_07210	Exopolyphosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.786
KPN17747.1	KPN17746.1	AO716_07220	AO716_07215	Peptidase S8; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S8 family.	Exopolyphosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.884
KPN17747.1	KPN19043.1	AO716_07220	AO716_07210	Peptidase S8; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S8 family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.718
KPN18584.1	KPN16436.1	AO716_12395	AO716_16370	dUTPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.475
KPN18584.1	KPN18966.1	AO716_12395	AO716_14555	dUTPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.587
KPN18584.1	KPN19043.1	AO716_12395	AO716_07210	dUTPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.629
KPN18584.1	KPN22108.1	AO716_12395	AO716_03690	dUTPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.709
KPN18584.1	rbpA	AO716_12395	AO716_12425	dUTPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.	0.772
KPN18894.1	KPN16436.1	AO716_14165	AO716_16370	dUTPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.546
KPN18894.1	KPN18966.1	AO716_14165	AO716_14555	dUTPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.653
KPN18894.1	KPN19043.1	AO716_14165	AO716_07210	dUTPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.666
KPN18894.1	KPN22108.1	AO716_14165	AO716_03690	dUTPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.669
KPN18894.1	rbpA	AO716_14165	AO716_12425	dUTPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. Belongs to the RNA polymerase-binding protein RbpA family.	0.773