Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSENLP00000000057SDE2 telomere maintenance homolog (S. pombe). (336 aa)    
Predicted Functional Partners:
fam32a
Family with sequence similarity 32 member A.
    
 0.994
slu7
SLU7 homolog, splicing factor.
   
 0.994
cdc40
Cell division cycle 40.
    
 0.993
syf2
SYF2 pre-mRNA splicing factor.
    
 0.991
ppil1
Peptidylprolyl isomerase like 1.
    
  0.986
cactin
Cactin, spliceosome C complex subunit.
    
 0.984
crnkl1
Crooked neck pre-mRNA splicing factor 1.
    
 
 0.982
NKAP
NFKB activating protein.
    
 0.979
ccdc12
Coiled-coil domain containing 12.
    
  0.978
fam50a
Family with sequence similarity 50 member A.
    
 0.973
Your Current Organism:
Echeneis naucrates
NCBI taxonomy Id: 173247
Other names: E. naucrates, live sharksucker
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