Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
crppaCDP-L-ribitol pyrophosphorylase A. (438 aa)    
Predicted Functional Partners:
fktn
Fukutin.
     
 0.962
xpc
XPC complex subunit, DNA damage recognition and repair factor.
    
 0.904
ENSENLP00000048193
annotation not available
   
 
 0.888
ENSENLP00000027901
WD repeat domain 90.
    
 0.852
rad23a
RAD23 homolog A, nucleotide excision repair protein.
   
 0.813
RAD23B
RAD23 homolog B, nucleotide excision repair protein.
   
 0.813
fkrp
Fukutin related protein.
    
 0.801
pcid2
PCI domain containing 2.
    
 
 0.798
ercc3
ERCC excision repair 3, TFIIH core complex helicase subunit.
    
 0.769
ENSENLP00000018517
annotation not available
    
 
 0.760
Your Current Organism:
Echeneis naucrates
NCBI taxonomy Id: 173247
Other names: E. naucrates, live sharksucker
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