LOC115047152 protein (Echeneis naucrates) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC115047152

MAGUK p55 subfamily member 2-like. (569 aa)

Predicted Functional Partners:

ENSENLP00000028822

0.816

LOC115047037

0.816

lin7c

0.816

LOC115052057

0.790

APBA1

0.790

ENSENLP00000028972

0.790

ENSENLP00000040246

0.790

ENSENLP00000044811

0.790

adsl

0.753

gmps

0.750

Your Current Organism:

Echeneis naucrates

NCBI taxonomy Id: 173247
Other names: E. naucrates, live sharksucker

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APBA1	ENSENLP00000028822	ENSENLP00000021794	ENSENLP00000028822	Amyloid beta precursor protein binding family A member 1.	Lin-7 homolog A (C. elegans).	0.793
APBA1	LOC115047037	ENSENLP00000021794	ENSENLP00000044696	Amyloid beta precursor protein binding family A member 1.	Protein lin-7 homolog B.	0.793
APBA1	LOC115047152	ENSENLP00000021794	ENSENLP00000001115	Amyloid beta precursor protein binding family A member 1.	MAGUK p55 subfamily member 2-like.	0.790
APBA1	lin7c	ENSENLP00000021794	ENSENLP00000048749	Amyloid beta precursor protein binding family A member 1.	Lin-7 homolog C, crumbs cell polarity complex component.	0.793
ENSENLP00000028822	APBA1	ENSENLP00000028822	ENSENLP00000021794	Lin-7 homolog A (C. elegans).	Amyloid beta precursor protein binding family A member 1.	0.793
ENSENLP00000028822	ENSENLP00000028972	ENSENLP00000028822	ENSENLP00000028972	Lin-7 homolog A (C. elegans).	Amyloid beta precursor protein binding family A member 3.	0.764
ENSENLP00000028822	ENSENLP00000040246	ENSENLP00000028822	ENSENLP00000040246	Lin-7 homolog A (C. elegans).	annotation not available	0.793
ENSENLP00000028822	ENSENLP00000044811	ENSENLP00000028822	ENSENLP00000044811	Lin-7 homolog A (C. elegans).	Amyloid beta (A4) precursor protein-binding, family A, member 2b.	0.793
ENSENLP00000028822	LOC115047152	ENSENLP00000028822	ENSENLP00000001115	Lin-7 homolog A (C. elegans).	MAGUK p55 subfamily member 2-like.	0.816
ENSENLP00000028822	LOC115052057	ENSENLP00000028822	ENSENLP00000011236	Lin-7 homolog A (C. elegans).	Amyloid-beta A4 precursor protein-binding family A member 1-like.	0.793
ENSENLP00000028972	ENSENLP00000028822	ENSENLP00000028972	ENSENLP00000028822	Amyloid beta precursor protein binding family A member 3.	Lin-7 homolog A (C. elegans).	0.764
ENSENLP00000028972	LOC115047037	ENSENLP00000028972	ENSENLP00000044696	Amyloid beta precursor protein binding family A member 3.	Protein lin-7 homolog B.	0.764
ENSENLP00000028972	LOC115047152	ENSENLP00000028972	ENSENLP00000001115	Amyloid beta precursor protein binding family A member 3.	MAGUK p55 subfamily member 2-like.	0.790
ENSENLP00000028972	lin7c	ENSENLP00000028972	ENSENLP00000048749	Amyloid beta precursor protein binding family A member 3.	Lin-7 homolog C, crumbs cell polarity complex component.	0.764
ENSENLP00000040246	ENSENLP00000028822	ENSENLP00000040246	ENSENLP00000028822	annotation not available	Lin-7 homolog A (C. elegans).	0.793
ENSENLP00000040246	LOC115047037	ENSENLP00000040246	ENSENLP00000044696	annotation not available	Protein lin-7 homolog B.	0.793
ENSENLP00000040246	LOC115047152	ENSENLP00000040246	ENSENLP00000001115	annotation not available	MAGUK p55 subfamily member 2-like.	0.790
ENSENLP00000040246	lin7c	ENSENLP00000040246	ENSENLP00000048749	annotation not available	Lin-7 homolog C, crumbs cell polarity complex component.	0.793
ENSENLP00000044811	ENSENLP00000028822	ENSENLP00000044811	ENSENLP00000028822	Amyloid beta (A4) precursor protein-binding, family A, member 2b.	Lin-7 homolog A (C. elegans).	0.793
ENSENLP00000044811	LOC115047037	ENSENLP00000044811	ENSENLP00000044696	Amyloid beta (A4) precursor protein-binding, family A, member 2b.	Protein lin-7 homolog B.	0.793