Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSENLP00000001568Histone deacetylase 7a. (932 aa)    
Predicted Functional Partners:
arid4a
AT-rich interaction domain 4A.
    
 0.871
arid4b
AT-rich interaction domain 4B.
    
 0.871
prkn
Parkin RBR E3 ubiquitin protein ligase.
    
 0.859
ENSENLP00000048193
annotation not available
   
 
 0.843
ENSENLP00000014965
Calcium/calmodulin-dependent protein kinase IV.
   
 0.833
ENSENLP00000023263
H2A.Z variant histone 2a.
   
 0.829
LOC115058602
Histone H2A.Z.
   
 0.829
ENSENLP00000027901
WD repeat domain 90.
    
 0.827
LOC115055238
Core histone macro-H2A.2.
   
 0.805
LOC115061434
E3 SUMO-protein ligase RanBP2-like.
  
 0.805
Your Current Organism:
Echeneis naucrates
NCBI taxonomy Id: 173247
Other names: E. naucrates, live sharksucker
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