Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rpa2Replication protein A2. (277 aa)    
Predicted Functional Partners:
rpa3
Replication protein A3.
   
 0.997
LOC115052984
Replication protein A 70 kDa DNA-binding subunit-like.
   
 0.986
RPA1
Replication protein A 70 kDa DNA-binding subunit-like.
   
 0.986
blm
BLM RecQ like helicase.
   
 0.980
ENSENLP00000005495
DNA topoisomerase III alpha.
    
 0.977
ENSENLP00000030869
RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae).
    
 0.973
pold1
DNA polymerase delta 1, catalytic subunit.
   
 0.957
pola2
DNA polymerase alpha 2, accessory subunit.
   
 0.956
prim2
DNA primase subunit 2.
   
 0.948
LOC115044183
T-cell surface glycoprotein CD8 alpha chain-like.
   
 0.945
Your Current Organism:
Echeneis naucrates
NCBI taxonomy Id: 173247
Other names: E. naucrates, live sharksucker
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