Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pcnaProliferating cell nuclear antigen. (260 aa)    
Predicted Functional Partners:
rfc3
Replication factor C subunit 3.
  
 0.999
rfc4
Replication factor C subunit 4.
  
 0.999
lig1
DNA ligase 1.
  
 0.999
pold1
DNA polymerase delta 1, catalytic subunit.
  
 0.998
ENSENLP00000035431
RAD18 E3 ubiquitin protein ligase.
   
 0.998
dtl
Denticleless E3 ubiquitin protein ligase homolog.
   
 0.998
ENSENLP00000045555
Minichromosome maintenance complex component 7.
   
 
 0.998
msh6
mutS homolog 6.
  
 0.998
rfc5
Replication factor C subunit 5.
  
 0.997
ENSENLP00000006877
Exonuclease 1.
  
 0.997
Your Current Organism:
Echeneis naucrates
NCBI taxonomy Id: 173247
Other names: E. naucrates, live sharksucker
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