Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lin28aLin-28 homolog A. (201 aa)    
Predicted Functional Partners:
LOC115052178
POU domain, class 5, transcription factor 1-like.
   
 0.936
snrpb
Small nuclear ribonucleoprotein polypeptides B and B1.
   
  0.932
ENSENLP00000011214
EBNA1 binding protein 2.
   
   0.927
POP1
POP1 homolog, ribonuclease P/MRP subunit.
    
   0.915
xrn2
5'-3' exoribonuclease 2.
    
 
 0.899
ENSENLP00000042988
annotation not available
    
 0.894
TUT4
Terminal uridylyl transferase 4.
    
 0.894
snrpg
Small nuclear ribonucleoprotein polypeptide G.
   
  0.872
snrpf
Small nuclear ribonucleoprotein polypeptide F.
   
  0.872
ENSENLP00000040741
Ribosomal protein L26.
   
 
 0.862
Your Current Organism:
Echeneis naucrates
NCBI taxonomy Id: 173247
Other names: E. naucrates, live sharksucker
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