STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ddx20DEAD-box helicase 20. (840 aa)    
Predicted Functional Partners:
gemin5
Gem nuclear organelle associated protein 5.
   
 0.999
gemin7
Gem nuclear organelle associated protein 7.
    
 0.999
gemin4
Gem nuclear organelle associated protein 4.
   
 0.999
gemin8
Gem nuclear organelle associated protein 8.
    
 0.999
gemin6
Gem nuclear organelle associated protein 6.
   
 0.996
LOC115049092
Survival motor neuron protein 1-like.
    
 0.996
snrpf
Small nuclear ribonucleoprotein polypeptide F.
    
 0.993
gemin2
Gem nuclear organelle associated protein 2.
   
 0.990
strap
Serine/threonine kinase receptor associated protein.
    
 
 0.989
snrpe
Small nuclear ribonucleoprotein polypeptide E.
   
 0.987
Your Current Organism:
Echeneis naucrates
NCBI taxonomy Id: 173247
Other names: E. naucrates, live sharksucker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.