pdcd11 protein (Echeneis naucrates) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

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textmining

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co-expression

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gene neighborhood

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[Homology]

Score

pdcd11

Programmed cell death 11. (1815 aa)

Predicted Functional Partners:

wdr46

0.999

ENSENLP00000007973

0.999

ddx52

0.999

LOC115061865

0.999

nop14

0.999

noc4l

0.999

nol6

0.998

emg1

0.998

dcaf13

0.998

utp3

0.998

Your Current Organism:

Echeneis naucrates

NCBI taxonomy Id: 173247
Other names: E. naucrates, live sharksucker

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSENLP00000007973	LOC115061865	ENSENLP00000007973	ENSENLP00000036788	UTP20 small subunit processome component.	U3 small nucleolar RNA-associated protein 14 homolog A-like.	0.999
ENSENLP00000007973	dcaf13	ENSENLP00000007973	ENSENLP00000020374	UTP20 small subunit processome component.	DDB1 and CUL4 associated factor 13.	0.998
ENSENLP00000007973	ddx52	ENSENLP00000007973	ENSENLP00000016941	UTP20 small subunit processome component.	DExD-box helicase 52.	0.995
ENSENLP00000007973	emg1	ENSENLP00000007973	ENSENLP00000007273	UTP20 small subunit processome component.	EMG1 N1-specific pseudouridine methyltransferase.	0.998
ENSENLP00000007973	noc4l	ENSENLP00000007973	ENSENLP00000052483	UTP20 small subunit processome component.	Nucleolar complex associated 4 homolog.	0.999
ENSENLP00000007973	nol6	ENSENLP00000007973	ENSENLP00000001984	UTP20 small subunit processome component.	Nucleolar protein 6.	0.997
ENSENLP00000007973	nop14	ENSENLP00000007973	ENSENLP00000047783	UTP20 small subunit processome component.	NOP14 nucleolar protein.	0.999
ENSENLP00000007973	pdcd11	ENSENLP00000007973	ENSENLP00000001792	UTP20 small subunit processome component.	Programmed cell death 11.	0.999
ENSENLP00000007973	utp3	ENSENLP00000007973	ENSENLP00000021822	UTP20 small subunit processome component.	UTP3 small subunit processome component.	0.998
ENSENLP00000007973	wdr46	ENSENLP00000007973	ENSENLP00000001924	UTP20 small subunit processome component.	WD repeat domain 46.	0.999
LOC115061865	ENSENLP00000007973	ENSENLP00000036788	ENSENLP00000007973	U3 small nucleolar RNA-associated protein 14 homolog A-like.	UTP20 small subunit processome component.	0.999
LOC115061865	dcaf13	ENSENLP00000036788	ENSENLP00000020374	U3 small nucleolar RNA-associated protein 14 homolog A-like.	DDB1 and CUL4 associated factor 13.	0.999
LOC115061865	ddx52	ENSENLP00000036788	ENSENLP00000016941	U3 small nucleolar RNA-associated protein 14 homolog A-like.	DExD-box helicase 52.	0.996
LOC115061865	emg1	ENSENLP00000036788	ENSENLP00000007273	U3 small nucleolar RNA-associated protein 14 homolog A-like.	EMG1 N1-specific pseudouridine methyltransferase.	0.999
LOC115061865	noc4l	ENSENLP00000036788	ENSENLP00000052483	U3 small nucleolar RNA-associated protein 14 homolog A-like.	Nucleolar complex associated 4 homolog.	0.997
LOC115061865	nol6	ENSENLP00000036788	ENSENLP00000001984	U3 small nucleolar RNA-associated protein 14 homolog A-like.	Nucleolar protein 6.	0.995
LOC115061865	nop14	ENSENLP00000036788	ENSENLP00000047783	U3 small nucleolar RNA-associated protein 14 homolog A-like.	NOP14 nucleolar protein.	0.999
LOC115061865	pdcd11	ENSENLP00000036788	ENSENLP00000001792	U3 small nucleolar RNA-associated protein 14 homolog A-like.	Programmed cell death 11.	0.999
LOC115061865	utp3	ENSENLP00000036788	ENSENLP00000021822	U3 small nucleolar RNA-associated protein 14 homolog A-like.	UTP3 small subunit processome component.	0.999
LOC115061865	wdr46	ENSENLP00000036788	ENSENLP00000001924	U3 small nucleolar RNA-associated protein 14 homolog A-like.	WD repeat domain 46.	0.999