Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rbm34RNA binding motif protein 34. (420 aa)    
Predicted Functional Partners:
ftsj3
FtsJ RNA 2'-O-methyltransferase 3.
   
 
 0.994
ENSENLP00000052768
DEAD (Asp-Glu-Ala-Asp) box polypeptide 27.
   
  0.994
rbm28
RNA binding motif protein 28.
   
 
 0.992
brix1
Biogenesis of ribosomes BRX1.
   
 
 0.991
rpf2
Ribosome production factor 2 homolog.
   
 
 0.990
ENSENLP00000011214
EBNA1 binding protein 2.
   
 
 0.989
ddx24
DEAD-box helicase 24.
   
 0.989
ddx18
DEAD-box helicase 18.
   
 0.988
nifk
Nucleolar protein interacting with the FHA domain of MKI67.
   
 
 0.987
ENSENLP00000037097
DEAD (Asp-Glu-Ala-Asp) box polypeptide 54.
   
 0.987
Your Current Organism:
Echeneis naucrates
NCBI taxonomy Id: 173247
Other names: E. naucrates, live sharksucker
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