tcf25 protein (Echeneis naucrates) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

tcf25

Transcription factor 25. (688 aa)

Predicted Functional Partners:

ltn1

0.987

NEMF

0.985

ufd1

0.969

vcp

0.925

ndufb7

0.925

ENSENLP00000040662

0.919

nploc4

0.919

SPATA5

0.903

spata5l1

0.903

ankzf1

0.657

Your Current Organism:

Echeneis naucrates

NCBI taxonomy Id: 173247
Other names: E. naucrates, live sharksucker

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSENLP00000040662	NEMF	ENSENLP00000040662	ENSENLP00000041099	annotation not available	Nuclear export mediator factor.	0.928
ENSENLP00000040662	SPATA5	ENSENLP00000040662	ENSENLP00000035374	annotation not available	Spermatogenesis associated 5.	0.936
ENSENLP00000040662	ankzf1	ENSENLP00000040662	ENSENLP00000047970	annotation not available	Ankyrin repeat and zinc finger peptidyl tRNA hydrolase 1.	0.915
ENSENLP00000040662	ltn1	ENSENLP00000040662	ENSENLP00000054038	annotation not available	Listerin E3 ubiquitin protein ligase 1.	0.901
ENSENLP00000040662	ndufb7	ENSENLP00000040662	ENSENLP00000041103	annotation not available	NADH:ubiquinone oxidoreductase subunit B7.	0.971
ENSENLP00000040662	spata5l1	ENSENLP00000040662	ENSENLP00000049061	annotation not available	Spermatogenesis associated 5 like 1.	0.936
ENSENLP00000040662	tcf25	ENSENLP00000040662	ENSENLP00000002240	annotation not available	Transcription factor 25.	0.919
ENSENLP00000040662	ufd1	ENSENLP00000040662	ENSENLP00000051913	annotation not available	Ubiquitin recognition factor in ER associated degradation 1.	0.992
ENSENLP00000040662	vcp	ENSENLP00000040662	ENSENLP00000016480	annotation not available	Valosin containing protein.	0.971
NEMF	ENSENLP00000040662	ENSENLP00000041099	ENSENLP00000040662	Nuclear export mediator factor.	annotation not available	0.928
NEMF	SPATA5	ENSENLP00000041099	ENSENLP00000035374	Nuclear export mediator factor.	Spermatogenesis associated 5.	0.882
NEMF	ankzf1	ENSENLP00000041099	ENSENLP00000047970	Nuclear export mediator factor.	Ankyrin repeat and zinc finger peptidyl tRNA hydrolase 1.	0.734
NEMF	ltn1	ENSENLP00000041099	ENSENLP00000054038	Nuclear export mediator factor.	Listerin E3 ubiquitin protein ligase 1.	0.997
NEMF	ndufb7	ENSENLP00000041099	ENSENLP00000041103	Nuclear export mediator factor.	NADH:ubiquinone oxidoreductase subunit B7.	0.882
NEMF	nploc4	ENSENLP00000041099	ENSENLP00000047431	Nuclear export mediator factor.	NPL4 homolog, ubiquitin recognition factor.	0.928
NEMF	spata5l1	ENSENLP00000041099	ENSENLP00000049061	Nuclear export mediator factor.	Spermatogenesis associated 5 like 1.	0.882
NEMF	tcf25	ENSENLP00000041099	ENSENLP00000002240	Nuclear export mediator factor.	Transcription factor 25.	0.985
NEMF	ufd1	ENSENLP00000041099	ENSENLP00000051913	Nuclear export mediator factor.	Ubiquitin recognition factor in ER associated degradation 1.	0.968
NEMF	vcp	ENSENLP00000041099	ENSENLP00000016480	Nuclear export mediator factor.	Valosin containing protein.	0.882
SPATA5	ENSENLP00000040662	ENSENLP00000035374	ENSENLP00000040662	Spermatogenesis associated 5.	annotation not available	0.936