Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
RNF146E3 ubiquitin-protein ligase rnf146-like. (386 aa)    
Predicted Functional Partners:
ENSENLP00000008086
Poly (ADP-ribose) polymerase 1.
    
 
 0.986
ENSENLP00000016196
Poly (ADP-ribose) polymerase 2.
    
 
 0.984
lig3
DNA ligase 3.
    
 
 0.975
chd1l
Chromodomain helicase DNA binding protein 1 like.
    
 
 0.974
xrcc1
X-ray repair cross complementing 1.
    
 
 0.969
supt16h
SPT16 homolog, facilitates chromatin remodeling subunit.
    
   0.966
ssrp1
Structure specific recognition protein 1.
    
 
 0.959
xpc
XPC complex subunit, DNA damage recognition and repair factor.
    
   0.958
LOC115048872
Poly [ADP-ribose] polymerase tankyrase-1.
    
 0.952
ENSENLP00000036671
annotation not available
    
 0.952
Your Current Organism:
Echeneis naucrates
NCBI taxonomy Id: 173247
Other names: E. naucrates, live sharksucker
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