Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pdlim1PDZ and LIM domain 1. (320 aa)    
Predicted Functional Partners:
pdlim4
PDZ and LIM domain 4.
     
 
0.942
pdlim3
PDZ and LIM domain 3.
  
  
 
0.942
LOC115049417
PDZ and LIM domain protein 2-like.
     
 
0.941
pdlim7
PDZ and LIM domain 7.
   
 
0.832
LOC115051893
PDZ and LIM domain protein 5-like.
   
 
0.825
pdlim5
PDZ and LIM domain 5.
   
 
0.825
LOC115053942
Integrin-linked protein kinase-like.
    
 0.707
ILK
Integrin-linked protein kinase.
    
 0.707
LOC115054976
Vinculin-like.
   
 0.705
ENSENLP00000053128
Vinculin b.
   
 0.705
Your Current Organism:
Echeneis naucrates
NCBI taxonomy Id: 173247
Other names: E. naucrates, live sharksucker
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