Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mterf3Mitochondrial transcription termination factor 3. (426 aa)    
Predicted Functional Partners:
ENSENLP00000008948
FAST kinase domains 2.
   
 0.980
rcc1l
RCC1 like.
    
  0.937
trub2
TruB pseudouridine synthase family member 2.
   
 0.936
ddx28
DEAD-box helicase 28.
    
 
 0.920
LOC115043289
Mitochondrial RNA pseudouridine synthase rpusd4-like.
   
 0.822
LOC115043572
Cytochrome c1, heme protein, mitochondrial.
     
  0.820
ENSENLP00000015629
Huntingtin.
     
  0.820
LOC115050094
Cytochrome b-c1 complex subunit 8.
     
  0.820
mrpl51
Mitochondrial ribosomal protein L51.
   
   0.791
ENSENLP00000028411
Mitochondrial ribosomal protein L13.
   
   0.732
Your Current Organism:
Echeneis naucrates
NCBI taxonomy Id: 173247
Other names: E. naucrates, live sharksucker
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