STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdc9Coiled-coil domain containing 9. (699 aa)    
Predicted Functional Partners:
eif4a3
Eukaryotic translation initiation factor 4A3.
   
  0.963
LOC115042365
Protein mago nashi homolog.
    
  0.949
ENSENLP00000042852
Pinin, desmosome associated protein.
    
  0.947
rbm8a
RNA binding motif protein 8A.
    
  0.938
ENSENLP00000054490
Casc3 exon junction complex subunit.
    
  0.936
UPF2
UPF2 regulator of nonsense mediated mRNA decay.
    
  0.927
tdrd3
Tudor domain containing 3.
    
  0.926
sap18
Sin3A associated protein 18.
    
  0.913
LOC115041985
Regulator of nonsense transcripts 1.
    
  0.839
LOC115052850
Serine/arginine-rich splicing factor 1-like.
    
  0.839
Your Current Organism:
Echeneis naucrates
NCBI taxonomy Id: 173247
Other names: E. naucrates, live sharksucker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.