LOC115044118 protein (Echeneis naucrates) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC115044118

Vesicle-associated membrane protein-associated protein B/C-like. (246 aa)

Predicted Functional Partners:

stard3

0.988

atf6

0.895

bcap31

0.894

rmdn2

0.872

atf6b

0.869

bcap29

0.864

zfyve27

0.859

ttc1

0.845

sec63

0.834

ENSENLP00000023514

0.816

Your Current Organism:

Echeneis naucrates

NCBI taxonomy Id: 173247
Other names: E. naucrates, live sharksucker

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSENLP00000023514	LOC115044118	ENSENLP00000023514	ENSENLP00000011124	RAB3 GTPase activating protein subunit 2 (non-catalytic).	Vesicle-associated membrane protein-associated protein B/C-like.	0.816
ENSENLP00000023514	sec63	ENSENLP00000023514	ENSENLP00000028208	RAB3 GTPase activating protein subunit 2 (non-catalytic).	SEC63 homolog, protein translocation regulator.	0.480
ENSENLP00000023514	zfyve27	ENSENLP00000023514	ENSENLP00000016713	RAB3 GTPase activating protein subunit 2 (non-catalytic).	Zinc finger FYVE-type containing 27.	0.408
LOC115044118	ENSENLP00000023514	ENSENLP00000011124	ENSENLP00000023514	Vesicle-associated membrane protein-associated protein B/C-like.	RAB3 GTPase activating protein subunit 2 (non-catalytic).	0.816
LOC115044118	atf6	ENSENLP00000011124	ENSENLP00000001350	Vesicle-associated membrane protein-associated protein B/C-like.	Activating transcription factor 6.	0.895
LOC115044118	atf6b	ENSENLP00000011124	ENSENLP00000014339	Vesicle-associated membrane protein-associated protein B/C-like.	Activating transcription factor 6 beta.	0.869
LOC115044118	bcap29	ENSENLP00000011124	ENSENLP00000019906	Vesicle-associated membrane protein-associated protein B/C-like.	B cell receptor associated protein 29.	0.864
LOC115044118	bcap31	ENSENLP00000011124	ENSENLP00000009199	Vesicle-associated membrane protein-associated protein B/C-like.	B cell receptor associated protein 31.	0.894
LOC115044118	rmdn2	ENSENLP00000011124	ENSENLP00000006907	Vesicle-associated membrane protein-associated protein B/C-like.	Regulator of microtubule dynamics 2.	0.872
LOC115044118	sec63	ENSENLP00000011124	ENSENLP00000028208	Vesicle-associated membrane protein-associated protein B/C-like.	SEC63 homolog, protein translocation regulator.	0.834
LOC115044118	stard3	ENSENLP00000011124	ENSENLP00000004870	Vesicle-associated membrane protein-associated protein B/C-like.	StAR related lipid transfer domain containing 3.	0.988
LOC115044118	ttc1	ENSENLP00000011124	ENSENLP00000006680	Vesicle-associated membrane protein-associated protein B/C-like.	Tetratricopeptide repeat domain 1.	0.845
LOC115044118	zfyve27	ENSENLP00000011124	ENSENLP00000016713	Vesicle-associated membrane protein-associated protein B/C-like.	Zinc finger FYVE-type containing 27.	0.859
atf6	LOC115044118	ENSENLP00000001350	ENSENLP00000011124	Activating transcription factor 6.	Vesicle-associated membrane protein-associated protein B/C-like.	0.895
atf6	atf6b	ENSENLP00000001350	ENSENLP00000014339	Activating transcription factor 6.	Activating transcription factor 6 beta.	0.881
atf6	sec63	ENSENLP00000001350	ENSENLP00000028208	Activating transcription factor 6.	SEC63 homolog, protein translocation regulator.	0.726
atf6b	LOC115044118	ENSENLP00000014339	ENSENLP00000011124	Activating transcription factor 6 beta.	Vesicle-associated membrane protein-associated protein B/C-like.	0.869
atf6b	atf6	ENSENLP00000014339	ENSENLP00000001350	Activating transcription factor 6 beta.	Activating transcription factor 6.	0.881
atf6b	sec63	ENSENLP00000014339	ENSENLP00000028208	Activating transcription factor 6 beta.	SEC63 homolog, protein translocation regulator.	0.726
bcap29	LOC115044118	ENSENLP00000019906	ENSENLP00000011124	B cell receptor associated protein 29.	Vesicle-associated membrane protein-associated protein B/C-like.	0.864