Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
thyn1Thymocyte nuclear protein 1. (226 aa)    
Predicted Functional Partners:
trpt1
tRNA phosphotransferase 1.
      
 0.835
ndufs3
NADH:ubiquinone oxidoreductase core subunit S3.
   
 
  0.774
ndufs2
NADH:ubiquinone oxidoreductase core subunit S2.
   
 
  0.770
ndufv2
NADH:ubiquinone oxidoreductase core subunit V2.
     
  0.759
ndufs7
NADH:ubiquinone oxidoreductase core subunit S7.
     
 0.737
LOC115041296
PWWP domain-containing DNA repair factor 3B-like.
     
 0.719
NDUFS8
NADH-ubiquinone oxidoreductase subunit 8-like.
     
  0.708
ndufs8
NADH:ubiquinone oxidoreductase core subunit S8.
     
  0.708
LOC115052143
NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial-like.
    
  0.707
NDUFS1
NADH:ubiquinone oxidoreductase core subunit S1.
    
  0.707
Your Current Organism:
Echeneis naucrates
NCBI taxonomy Id: 173247
Other names: E. naucrates, live sharksucker
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