otud5 protein (Echeneis naucrates) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

otud5

OTU deubiquitinase 5. (549 aa)

Predicted Functional Partners:

rps27a

0.966

traf3

0.958

ENSENLP00000004347

0.943

uba52

0.909

ENSENLP00000023081

0.909

LOC115058291

0.892

ENSENLP00000035060

0.840

sart1

0.798

LOC115052297

0.793

ENSENLP00000023893

0.793

Your Current Organism:

Echeneis naucrates

NCBI taxonomy Id: 173247
Other names: E. naucrates, live sharksucker

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSENLP00000004347	ENSENLP00000023081	ENSENLP00000004347	ENSENLP00000023081	Ubiquitin B.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.991
ENSENLP00000004347	ENSENLP00000023893	ENSENLP00000004347	ENSENLP00000023893	Ubiquitin B.	Tnf receptor-associated factor 2a.	0.814
ENSENLP00000004347	ENSENLP00000035060	ENSENLP00000004347	ENSENLP00000035060	Ubiquitin B.	annotation not available	0.976
ENSENLP00000004347	LOC115052297	ENSENLP00000004347	ENSENLP00000009318	Ubiquitin B.	TNF receptor-associated factor 2-like.	0.814
ENSENLP00000004347	LOC115058291	ENSENLP00000004347	ENSENLP00000013694	Ubiquitin B.	TNF receptor-associated factor 5-like.	0.814
ENSENLP00000004347	otud5	ENSENLP00000004347	ENSENLP00000012003	Ubiquitin B.	OTU deubiquitinase 5.	0.943
ENSENLP00000004347	rps27a	ENSENLP00000004347	ENSENLP00000015622	Ubiquitin B.	Ribosomal protein S27a.	0.998
ENSENLP00000004347	traf3	ENSENLP00000004347	ENSENLP00000020452	Ubiquitin B.	TNF receptor associated factor 3.	0.814
ENSENLP00000004347	uba52	ENSENLP00000004347	ENSENLP00000005589	Ubiquitin B.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.998
ENSENLP00000023081	ENSENLP00000004347	ENSENLP00000023081	ENSENLP00000004347	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ubiquitin B.	0.991
ENSENLP00000023081	ENSENLP00000023893	ENSENLP00000023081	ENSENLP00000023893	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Tnf receptor-associated factor 2a.	0.753
ENSENLP00000023081	ENSENLP00000035060	ENSENLP00000023081	ENSENLP00000035060	Ubiquitin A-52 residue ribosomal protein fusion product 1.	annotation not available	0.995
ENSENLP00000023081	LOC115052297	ENSENLP00000023081	ENSENLP00000009318	Ubiquitin A-52 residue ribosomal protein fusion product 1.	TNF receptor-associated factor 2-like.	0.753
ENSENLP00000023081	LOC115058291	ENSENLP00000023081	ENSENLP00000013694	Ubiquitin A-52 residue ribosomal protein fusion product 1.	TNF receptor-associated factor 5-like.	0.782
ENSENLP00000023081	otud5	ENSENLP00000023081	ENSENLP00000012003	Ubiquitin A-52 residue ribosomal protein fusion product 1.	OTU deubiquitinase 5.	0.909
ENSENLP00000023081	rps27a	ENSENLP00000023081	ENSENLP00000015622	Ubiquitin A-52 residue ribosomal protein fusion product 1.	Ribosomal protein S27a.	0.998
ENSENLP00000023081	traf3	ENSENLP00000023081	ENSENLP00000020452	Ubiquitin A-52 residue ribosomal protein fusion product 1.	TNF receptor associated factor 3.	0.782
ENSENLP00000023893	ENSENLP00000004347	ENSENLP00000023893	ENSENLP00000004347	Tnf receptor-associated factor 2a.	Ubiquitin B.	0.814
ENSENLP00000023893	ENSENLP00000023081	ENSENLP00000023893	ENSENLP00000023081	Tnf receptor-associated factor 2a.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.753
ENSENLP00000023893	ENSENLP00000035060	ENSENLP00000023893	ENSENLP00000035060	Tnf receptor-associated factor 2a.	annotation not available	0.791