Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSENLP00000012083Cyclin D3. (258 aa)    
Predicted Functional Partners:
cdk6
Cyclin dependent kinase 6.
   
 0.968
cdk4
Cyclin dependent kinase 4.
   
 0.966
pcna
Proliferating cell nuclear antigen.
    
 0.962
ENSENLP00000009188
Retinoblastoma-like 1 (p107).
    
 0.946
rb1
RB transcriptional corepressor 1.
    
 0.946
cdk2
Cyclin dependent kinase 2.
   
 0.945
LOC115056074
Retinoblastoma-like protein 2.
    
 0.944
rbl2
RB transcriptional corepressor like 2.
    
 0.944
LOC115043889
Cyclin-dependent kinase inhibitor 1-like.
   
 0.935
cdk1
Cyclin dependent kinase 1.
   
 0.930
Your Current Organism:
Echeneis naucrates
NCBI taxonomy Id: 173247
Other names: E. naucrates, live sharksucker
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