STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prpf6pre-mRNA processing factor 6. (969 aa)    
Predicted Functional Partners:
sart1
Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.
   
 0.999
sf3a3
Splicing factor 3a subunit 3.
   
 0.999
ddx23
DEAD-box helicase 23.
   
 0.999
txnl4a
Thioredoxin like 4A.
    
 0.999
ENSENLP00000009167
LSM8 homolog, U6 small nuclear RNA associated.
    
 0.999
prpf4
pre-mRNA processing factor 4.
   
 0.999
ENSENLP00000012578
PRP3 pre-mRNA processing factor 3 homolog (yeast).
   
 0.999
snrpd1
Small nuclear ribonucleoprotein D1 polypeptide.
   
 0.999
sf3b4
Splicing factor 3b subunit 4.
    
 0.999
snrpd2
Small nuclear ribonucleoprotein D2 polypeptide.
   
 0.999
Your Current Organism:
Echeneis naucrates
NCBI taxonomy Id: 173247
Other names: E. naucrates, live sharksucker
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.