lsm1 protein (Echeneis naucrates) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Edges represent protein-protein associations

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Coexpression

Experiments

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[Homology]

Score

lsm1

LSM1 homolog, mRNA degradation associated. (133 aa)

Predicted Functional Partners:

lsm6

0.999

lsm2

0.999

lsm5

0.999

lsm7

0.999

ENSENLP00000001639

0.996

ENSENLP00000003171

0.993

ENSENLP00000003471

0.993

ENSENLP00000017743

0.993

patl1

0.991

ENSENLP00000048915

0.991

Your Current Organism:

Echeneis naucrates

NCBI taxonomy Id: 173247
Other names: E. naucrates, live sharksucker

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSENLP00000001639	ENSENLP00000003171	ENSENLP00000001639	ENSENLP00000003171	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.995
ENSENLP00000001639	ENSENLP00000003471	ENSENLP00000001639	ENSENLP00000003471	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.	annotation not available	0.995
ENSENLP00000001639	ENSENLP00000048915	ENSENLP00000001639	ENSENLP00000048915	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.	PAT1 homolog 2.	0.970
ENSENLP00000001639	lsm1	ENSENLP00000001639	ENSENLP00000014942	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.	LSM1 homolog, mRNA degradation associated.	0.996
ENSENLP00000001639	lsm2	ENSENLP00000001639	ENSENLP00000012877	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.999
ENSENLP00000001639	lsm5	ENSENLP00000001639	ENSENLP00000046714	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.999
ENSENLP00000001639	lsm6	ENSENLP00000001639	ENSENLP00000012858	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.999
ENSENLP00000001639	lsm7	ENSENLP00000001639	ENSENLP00000048578	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.998
ENSENLP00000001639	patl1	ENSENLP00000001639	ENSENLP00000037554	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.	PAT1 homolog 1, processing body mRNA decay factor.	0.970
ENSENLP00000003171	ENSENLP00000001639	ENSENLP00000003171	ENSENLP00000001639	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated.	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.995
ENSENLP00000003171	ENSENLP00000017743	ENSENLP00000003171	ENSENLP00000017743	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated.	annotation not available	0.982
ENSENLP00000003171	ENSENLP00000048915	ENSENLP00000003171	ENSENLP00000048915	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated.	PAT1 homolog 2.	0.966
ENSENLP00000003171	lsm1	ENSENLP00000003171	ENSENLP00000014942	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated.	LSM1 homolog, mRNA degradation associated.	0.993
ENSENLP00000003171	lsm2	ENSENLP00000003171	ENSENLP00000012877	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated.	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.995
ENSENLP00000003171	lsm5	ENSENLP00000003171	ENSENLP00000046714	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated.	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.995
ENSENLP00000003171	lsm6	ENSENLP00000003171	ENSENLP00000012858	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated.	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.995
ENSENLP00000003171	lsm7	ENSENLP00000003171	ENSENLP00000048578	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated.	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.995
ENSENLP00000003171	patl1	ENSENLP00000003171	ENSENLP00000037554	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated.	PAT1 homolog 1, processing body mRNA decay factor.	0.966
ENSENLP00000003471	ENSENLP00000001639	ENSENLP00000003471	ENSENLP00000001639	annotation not available	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.995
ENSENLP00000003471	ENSENLP00000017743	ENSENLP00000003471	ENSENLP00000017743	annotation not available	annotation not available	0.982