LOC115038359 protein (Echeneis naucrates) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC115038359

5' exonuclease Apollo-like. (612 aa)

Predicted Functional Partners:

ENSENLP00000026065

0.924

sympk

0.913

xrcc5

0.913

xrcc6

0.912

ENSENLP00000003772

0.906

fip1l1

0.902

papolg

0.896

cstf1

0.886

pcf11

0.885

ENSENLP00000001850

0.877

Your Current Organism:

Echeneis naucrates

NCBI taxonomy Id: 173247
Other names: E. naucrates, live sharksucker

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSENLP00000001850	ENSENLP00000003772	ENSENLP00000001850	ENSENLP00000003772	annotation not available	Integrator complex subunit 4.	0.442
ENSENLP00000001850	LOC115038359	ENSENLP00000001850	ENSENLP00000017851	annotation not available	5' exonuclease Apollo-like.	0.877
ENSENLP00000001850	xrcc5	ENSENLP00000001850	ENSENLP00000048359	annotation not available	X-ray repair cross complementing 5.	0.524
ENSENLP00000001850	xrcc6	ENSENLP00000001850	ENSENLP00000018742	annotation not available	X-ray repair cross complementing 6.	0.743
ENSENLP00000003772	ENSENLP00000001850	ENSENLP00000003772	ENSENLP00000001850	Integrator complex subunit 4.	annotation not available	0.442
ENSENLP00000003772	LOC115038359	ENSENLP00000003772	ENSENLP00000017851	Integrator complex subunit 4.	5' exonuclease Apollo-like.	0.906
ENSENLP00000003772	pcf11	ENSENLP00000003772	ENSENLP00000009611	Integrator complex subunit 4.	PCF11 cleavage and polyadenylation factor subunit.	0.716
ENSENLP00000003772	sympk	ENSENLP00000003772	ENSENLP00000043955	Integrator complex subunit 4.	Symplekin.	0.549
ENSENLP00000026065	LOC115038359	ENSENLP00000026065	ENSENLP00000017851	Cleavage and polyadenylation specific factor 1.	5' exonuclease Apollo-like.	0.924
ENSENLP00000026065	cstf1	ENSENLP00000026065	ENSENLP00000045254	Cleavage and polyadenylation specific factor 1.	Cleavage stimulation factor subunit 1.	0.968
ENSENLP00000026065	fip1l1	ENSENLP00000026065	ENSENLP00000000130	Cleavage and polyadenylation specific factor 1.	Factor interacting with PAPOLA and CPSF1.	0.999
ENSENLP00000026065	papolg	ENSENLP00000026065	ENSENLP00000018895	Cleavage and polyadenylation specific factor 1.	poly(A) polymerase gamma.	0.998
ENSENLP00000026065	pcf11	ENSENLP00000026065	ENSENLP00000009611	Cleavage and polyadenylation specific factor 1.	PCF11 cleavage and polyadenylation factor subunit.	0.998
ENSENLP00000026065	sympk	ENSENLP00000026065	ENSENLP00000043955	Cleavage and polyadenylation specific factor 1.	Symplekin.	0.999
LOC115038359	ENSENLP00000001850	ENSENLP00000017851	ENSENLP00000001850	5' exonuclease Apollo-like.	annotation not available	0.877
LOC115038359	ENSENLP00000003772	ENSENLP00000017851	ENSENLP00000003772	5' exonuclease Apollo-like.	Integrator complex subunit 4.	0.906
LOC115038359	ENSENLP00000026065	ENSENLP00000017851	ENSENLP00000026065	5' exonuclease Apollo-like.	Cleavage and polyadenylation specific factor 1.	0.924
LOC115038359	cstf1	ENSENLP00000017851	ENSENLP00000045254	5' exonuclease Apollo-like.	Cleavage stimulation factor subunit 1.	0.886
LOC115038359	fip1l1	ENSENLP00000017851	ENSENLP00000000130	5' exonuclease Apollo-like.	Factor interacting with PAPOLA and CPSF1.	0.902
LOC115038359	papolg	ENSENLP00000017851	ENSENLP00000018895	5' exonuclease Apollo-like.	poly(A) polymerase gamma.	0.896