LOC115052052 protein (Echeneis naucrates) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC115052052

Neural proliferation differentiation and control protein 1-like. (314 aa)

Predicted Functional Partners:

LOC115052178

0.609

pou6f1

0.446

ENSENLP00000039183

0.446

LOC115054888

0.420

ENSENLP00000020730

0.420

ENSENLP00000027553

0.420

ENSENLP00000041729

0.420

POU3F4

0.420

ENSENLP00000046983

0.420

pou3f3

0.420

Your Current Organism:

Echeneis naucrates

NCBI taxonomy Id: 173247
Other names: E. naucrates, live sharksucker

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSENLP00000020730	LOC115052052	ENSENLP00000020730	ENSENLP00000050053	POU class 3 homeobox 2b.	Neural proliferation differentiation and control protein 1-like.	0.420
ENSENLP00000027553	LOC115052052	ENSENLP00000027553	ENSENLP00000050053	POU class 3 homeobox 2a.	Neural proliferation differentiation and control protein 1-like.	0.420
ENSENLP00000039183	LOC115052052	ENSENLP00000039183	ENSENLP00000050053	POU class 6 homeobox 2.	Neural proliferation differentiation and control protein 1-like.	0.446
ENSENLP00000041729	LOC115052052	ENSENLP00000041729	ENSENLP00000050053	POU class 2 homeobox 2a.	Neural proliferation differentiation and control protein 1-like.	0.420
ENSENLP00000046983	LOC115052052	ENSENLP00000046983	ENSENLP00000050053	POU class 2 homeobox 1b.	Neural proliferation differentiation and control protein 1-like.	0.420
LOC115052052	ENSENLP00000020730	ENSENLP00000050053	ENSENLP00000020730	Neural proliferation differentiation and control protein 1-like.	POU class 3 homeobox 2b.	0.420
LOC115052052	ENSENLP00000027553	ENSENLP00000050053	ENSENLP00000027553	Neural proliferation differentiation and control protein 1-like.	POU class 3 homeobox 2a.	0.420
LOC115052052	ENSENLP00000039183	ENSENLP00000050053	ENSENLP00000039183	Neural proliferation differentiation and control protein 1-like.	POU class 6 homeobox 2.	0.446
LOC115052052	ENSENLP00000041729	ENSENLP00000050053	ENSENLP00000041729	Neural proliferation differentiation and control protein 1-like.	POU class 2 homeobox 2a.	0.420
LOC115052052	ENSENLP00000046983	ENSENLP00000050053	ENSENLP00000046983	Neural proliferation differentiation and control protein 1-like.	POU class 2 homeobox 1b.	0.420
LOC115052052	LOC115052178	ENSENLP00000050053	ENSENLP00000050063	Neural proliferation differentiation and control protein 1-like.	POU domain, class 5, transcription factor 1-like.	0.609
LOC115052052	LOC115054888	ENSENLP00000050053	ENSENLP00000000185	Neural proliferation differentiation and control protein 1-like.	POU domain, class 3, transcription factor 3-B.	0.420
LOC115052052	POU3F4	ENSENLP00000050053	ENSENLP00000044549	Neural proliferation differentiation and control protein 1-like.	POU class 3 homeobox 4.	0.420
LOC115052052	pou3f3	ENSENLP00000050053	ENSENLP00000047183	Neural proliferation differentiation and control protein 1-like.	POU class 3 homeobox 3.	0.420
LOC115052052	pou6f1	ENSENLP00000050053	ENSENLP00000039094	Neural proliferation differentiation and control protein 1-like.	POU class 6 homeobox 1.	0.446
LOC115052178	LOC115052052	ENSENLP00000050063	ENSENLP00000050053	POU domain, class 5, transcription factor 1-like.	Neural proliferation differentiation and control protein 1-like.	0.609
LOC115054888	LOC115052052	ENSENLP00000000185	ENSENLP00000050053	POU domain, class 3, transcription factor 3-B.	Neural proliferation differentiation and control protein 1-like.	0.420
POU3F4	LOC115052052	ENSENLP00000044549	ENSENLP00000050053	POU class 3 homeobox 4.	Neural proliferation differentiation and control protein 1-like.	0.420
pou3f3	LOC115052052	ENSENLP00000047183	ENSENLP00000050053	POU class 3 homeobox 3.	Neural proliferation differentiation and control protein 1-like.	0.420
pou6f1	LOC115052052	ENSENLP00000039094	ENSENLP00000050053	POU class 6 homeobox 1.	Neural proliferation differentiation and control protein 1-like.	0.446