KUO62246.1 protein (Gracilibacter sp. BRHc7a)

Nodes:

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second shell of interactors

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Edges represent protein-protein associations

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Known Interactions

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experimentally determined

Predicted Interactions

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protein homology

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[Homology]

Score

KUO62246.1

TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (172 aa)

Predicted Functional Partners:

KUO62237.1

0.865

KUO58956.1

0.508

KUO63602.1

0.497

KUO64065.1

0.425

KUO63803.1

0.425

KUO58679.1

0.405

Your Current Organism:

Gracilibacter sp. BRHc7a

NCBI taxonomy Id: 1734398
Other names: G. sp. BRH_c7a, Gracilibacter sp. BRH_c7a

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KUO58679.1	KUO62246.1	APF84_09420	APF84_12900	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.405
KUO58956.1	KUO62237.1	APF84_05740	APF84_12895	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ketopantoate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.672
KUO58956.1	KUO62246.1	APF84_05740	APF84_12900	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.508
KUO58956.1	KUO63803.1	APF84_05740	APF84_09295	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.709
KUO58956.1	KUO64065.1	APF84_05740	APF84_08110	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.415
KUO62237.1	KUO58956.1	APF84_12895	APF84_05740	Ketopantoate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.672
KUO62237.1	KUO62246.1	APF84_12895	APF84_12900	Ketopantoate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.865
KUO62237.1	KUO63602.1	APF84_12895	APF84_18760	Ketopantoate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.520
KUO62237.1	KUO63803.1	APF84_12895	APF84_09295	Ketopantoate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.470
KUO62237.1	KUO64065.1	APF84_12895	APF84_08110	Ketopantoate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.443
KUO62246.1	KUO58679.1	APF84_12900	APF84_09420	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.405
KUO62246.1	KUO58956.1	APF84_12900	APF84_05740	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.508
KUO62246.1	KUO62237.1	APF84_12900	APF84_12895	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ketopantoate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.865
KUO62246.1	KUO63602.1	APF84_12900	APF84_18760	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.497
KUO62246.1	KUO63803.1	APF84_12900	APF84_09295	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.425
KUO62246.1	KUO64065.1	APF84_12900	APF84_08110	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.425
KUO63602.1	KUO62237.1	APF84_18760	APF84_12895	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ketopantoate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.520
KUO63602.1	KUO62246.1	APF84_18760	APF84_12900	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.497
KUO63803.1	KUO58956.1	APF84_09295	APF84_05740	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.709
KUO63803.1	KUO62237.1	APF84_09295	APF84_12895	Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ketopantoate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.470

page 1 of 2

Network Stats

number of nodes:

11

number of edges:

55

average node degree:

10

avg. local clustering coefficient:

1

expected number of edges:

11

PPI enrichment p-value:

< 1.0e-16

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0015979

Photosynthesis

11 of 120

1.62

3.76

3.51e-15

GO:0022900

Electron transport chain

6 of 84

1.51

1.87

8.06e-06

GO:0009767

Photosynthetic electron transport chain

3 of 11

2.09

1.57

0.00091

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0016168

Chlorophyll binding

5 of 10

2.35

3.72

4.09e-08

GO:0046906

Tetrapyrrole binding

6 of 49

1.74

2.66

2.31e-07

GO:0009055

Electron transfer activity

5 of 63

1.55

1.74

4.48e-05

GO:0019904

Protein domain specific binding

2 of 2

2.65

1.26

0.0050

GO:0051539

4 iron, 4 sulfur cluster binding

3 of 43

1.5

0.83

0.0175

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0009522

Photosystem I

9 of 12

2.53

8.79

2.62e-19

GO:0009521

Photosystem

11 of 39

2.1

7.43

5.42e-21

GO:0009538

Photosystem I reaction center

4 of 4

2.65

4.25

8.81e-09

GO:0031676

Plasma membrane-derived thylakoid membrane

9 of 98

1.62

3.43

1.03e-12

GO:0009523

Photosystem II

2 of 27

1.52

0.91

0.0116

(more ...)

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:4452

Photosystem I

9 of 11

2.57

8.75

6.17e-19

CL:4401

Photosystem

11 of 39

2.1

7.24

3.35e-20

CL:4455

Photosystem I reaction center, and Photosystem I

6 of 6

2.65

5.9

3.47e-12

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00195

Photosynthesis

11 of 58

1.93

6.08

2.02e-19

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0009522

Photosystem I

6 of 8

2.53

5.56

9.65e-12

GOCC:0009521

Photosystem

8 of 34

2.03

4.95

6.07e-13

GOCC:0016020

Membrane

11 of 803

0.79

0.83

1.04e-07

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0603

Photosystem I

6 of 8

2.53

5.47

1.52e-11

KW-0602

Photosynthesis

7 of 50

1.8

3.47

6.53e-10

KW-0793

Thylakoid

7 of 79

1.6

2.71

8.66e-09

KW-0148

Chlorophyll

3 of 8

2.23

2.13

7.59e-05

KW-0249

Electron transport

4 of 38

1.68

1.79

7.59e-05

(more ...)

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF00223

Photosystem I psaA/psaB protein

3 of 3

2.65

2.15

0.00011

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR036408

Photosystem I PsaA/PsaB superfamily

3 of 3

2.65

1.94

0.00027

IPR020586

Photosystem I PsaA/PsaB, conserved site

3 of 3

2.65

1.94

0.00027

IPR001280

Photosystem I PsaA/PsaB

3 of 3

2.65

1.94

0.00027

IPR006244

Photosystem I PsaB

2 of 2

2.65

1.07

0.0114

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