Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ALM10824.1 | ALM11297.1 | PeribacterB2_0331 | PeribacterB2_0833 | DNA helicase II / ATP-dependent DNA helicase PcrA; Belongs to the helicase family. UvrD subfamily. | DNA polymerase III subunit epsilon. | 0.694 |
| ALM10824.1 | uvrA | PeribacterB2_0331 | PeribacterB2_0145 | DNA helicase II / ATP-dependent DNA helicase PcrA; Belongs to the helicase family. UvrD subfamily. | Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | 0.628 |
| ALM10824.1 | uvrB | PeribacterB2_0331 | PeribacterB2_1074 | DNA helicase II / ATP-dependent DNA helicase PcrA; Belongs to the helicase family. UvrD subfamily. | Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | 0.768 |
| ALM10824.1 | uvrC | PeribacterB2_0331 | PeribacterB2_0802 | DNA helicase II / ATP-dependent DNA helicase PcrA; Belongs to the helicase family. UvrD subfamily. | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.721 |
| ALM11044.1 | pyrB | PeribacterB2_0564 | PeribacterB2_1024 | Hypothetical protein. | Aspartate carbamoyltransferase catalytic subunit; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.472 |
| ALM11044.1 | uvrC | PeribacterB2_0564 | PeribacterB2_0802 | Hypothetical protein. | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.893 |
| ALM11297.1 | ALM10824.1 | PeribacterB2_0833 | PeribacterB2_0331 | DNA polymerase III subunit epsilon. | DNA helicase II / ATP-dependent DNA helicase PcrA; Belongs to the helicase family. UvrD subfamily. | 0.694 |
| ALM11297.1 | uvrC | PeribacterB2_0833 | PeribacterB2_0802 | DNA polymerase III subunit epsilon. | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.813 |
| ALM11455.1 | ALM11470.1 | PeribacterB2_0995 | PeribacterB2_1010 | Hypothetical protein. | tRNA threonylcarbamoyladenosine biosynthesis protein; Belongs to the SUA5 family. | 0.816 |
| ALM11455.1 | tsaD | PeribacterB2_0995 | PeribacterB2_0537 | Hypothetical protein. | O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. | 0.993 |
| ALM11455.1 | uvrC | PeribacterB2_0995 | PeribacterB2_0802 | Hypothetical protein. | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.785 |
| ALM11470.1 | ALM11455.1 | PeribacterB2_1010 | PeribacterB2_0995 | tRNA threonylcarbamoyladenosine biosynthesis protein; Belongs to the SUA5 family. | Hypothetical protein. | 0.816 |
| ALM11470.1 | tsaD | PeribacterB2_1010 | PeribacterB2_0537 | tRNA threonylcarbamoyladenosine biosynthesis protein; Belongs to the SUA5 family. | O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. | 0.832 |
| ALM11470.1 | uvrC | PeribacterB2_1010 | PeribacterB2_0802 | tRNA threonylcarbamoyladenosine biosynthesis protein; Belongs to the SUA5 family. | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.786 |
| adk | uvrC | PeribacterB2_0028 | PeribacterB2_0802 | Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family. | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.706 |
| pyrB | ALM11044.1 | PeribacterB2_1024 | PeribacterB2_0564 | Aspartate carbamoyltransferase catalytic subunit; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | Hypothetical protein. | 0.472 |
| pyrB | uvrC | PeribacterB2_1024 | PeribacterB2_0802 | Aspartate carbamoyltransferase catalytic subunit; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.806 |
| tsaD | ALM11455.1 | PeribacterB2_0537 | PeribacterB2_0995 | O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. | Hypothetical protein. | 0.993 |
| tsaD | ALM11470.1 | PeribacterB2_0537 | PeribacterB2_1010 | O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. | tRNA threonylcarbamoyladenosine biosynthesis protein; Belongs to the SUA5 family. | 0.832 |
| tsaD | uvrC | PeribacterB2_0537 | PeribacterB2_0802 | O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.763 |
page 1 of 2