STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KQM62720.1Acetylpolyamine aminohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (339 aa)    
Predicted Functional Partners:
KQM66326.1
DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.959
KQM64219.1
AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the AAA ATPase family.
   
 0.858
lysK
lysine--tRNA ligase; Class I; LysRS1; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri this enzyme charges both tRNA molecules for lysine that exist in this organism (but the tRNALysUUU very poorly) and in the presence of LysRS2 can charge tRNAPyl with lysine; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.793
KQM67802.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.787
KQM64950.1
Peptidase C56; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.763
KQM63641.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.731
KQM65700.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.704
cobB
NAD-dependent deacylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sirtuin family. Class III subfamily.
    
 
 0.675
KQM64957.1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.675
KQM65786.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.672
Your Current Organism:
Sphingomonas sp. Leaf17
NCBI taxonomy Id: 1735683
Other names: S. sp. Leaf17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.