Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ACH52_0042Xylose isomerase domain-containing protein. (395 aa)    
Predicted Functional Partners:
ACH52_0043
Zinc-binding alcohol dehydrogenase.
     
 0.727
deoC-2
DeoC/LacD family aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.
  
  
 0.693
ACH52_0044
Zinc-binding alcohol dehydrogenase.
     
 0.692
ACH52_0040
FAD-dependent oxidoreductase.
       0.665
ACH52_0039
Pyridine nucleotide-disulfide oxidoreductase.
  
  
 0.655
ACH52_0038
Hypothetical protein.
       0.647
ACH52_0037
Carbohydrate kinase FGGY family; Belongs to the FGGY kinase family.
  
  
 0.472
ACH52_0045
RpiR family transcriptional regulator/SIS domain-containing protein.
       0.439
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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