Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACH52_0078Hypothetical protein. (108 aa)    
Predicted Functional Partners:
ACH52_0076
Hypothetical protein.
       0.773
ACH52_0077
Hypothetical protein.
       0.773
ACH52_0079
BCCT family transporter; Belongs to the BCCT transporter (TC 2.A.15) family.
       0.661
ACH52_0080
Pyruvate ferredoxin oxidoreductase gamma subunit PorC.
       0.661
ACH52_0081
Pyruvate ferredoxin oxidoreductase delta subunit PorD.
       0.661
PorA
Pyruvate ferredoxin oxidoreductase alpha subunit PorA.
       0.661
ACH52_0083
Pyruvate ferredoxin oxidoreductase beta subunit PorB.
       0.643
ACH52_0075
Sigma-54-dependent transcriptional regulator.
       0.528
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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