Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACH52_0230Cell surface protein. (2330 aa)    
Predicted Functional Partners:
ACH52_0227
Serine/threonine protein phosphatase.
  
  
 0.713
ACH52_0228
Serine/threonine protein kinase.
  
    0.713
ACH52_0229
Hypothetical protein.
       0.686
ACH52_0231
FHA domain-containing protein.
     
 0.596
ACH52_0226
WXG100 family protein.
       0.589
ACH52_0224
Hypothetical protein.
  
  
 0.572
ACH52_0225
Hypothetical protein.
       0.559
ACH52_0233
Serine/threonine protein kinase.
  
    0.550
ACH52_0232
FHA domain-containing protein.
       0.524
ACH52_2450
Pyruvate:ferredoxin oxidoreductase.
  
   0.513
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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