Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ACH52_0232FHA domain-containing protein. (476 aa)    
Predicted Functional Partners:
ACH52_0231
FHA domain-containing protein.
 
   
 0.927
ACH52_0233
Serine/threonine protein kinase.
 
 
 0.904
ACH52_0211
Serine/threonine protein kinase.
 
 
 0.888
ACH52_1510
Cell division protein FtsI.
   
 
 0.836
ACH52_0228
Serine/threonine protein kinase.
 
 
 0.833
ACH52_0227
Serine/threonine protein phosphatase.
 
 
 0.789
ACH52_0234
Hypothetical protein.
       0.701
ACH52_1037
Glycosyl transferase GT2 family.
  
 
 0.690
ACH52_3517
ABC transporter permease protein.
  
 
 0.670
ACH52_0839
Pyruvate dehydrogenase complex dihydrolipoamide acyltransferase E2 component.
   
 
 0.642
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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