close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACH52_0260Anti-sigma F factor antagonist. (100 aa)    
Predicted Functional Partners:
ACH52_0259
HAMP/SpoIIE domain-containing protein.
 
 
 0.966
ACH52_2224
Anti-sigma regulatory factor.
 
 
 0.961
ACH52_1123
HAMP/SpoIIE domain-containing protein.
 
 
 0.918
ACH52_2227
HAMP/SpoIIE domain-containing protein.
 
 
 0.918
ACH52_0384
Two component system histidine kinase/response regulator hybrid protein.
 
  
 0.896
ACH52_3010
Serine/threonine protein phosphatase.
 
 
 0.896
ACH52_3202
Histidine kinase.
  
 
 0.832
ACH52_3234
Anti-sigma regulatory factor.
  
 
 0.832
ACH52_0164
GGDEF/EAL domain-containing protein.
  
  
 0.772
ACH52_1068
GGDEF/EAL domain-containing protein.
  
  
 0.772
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.