Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACH52_0368Hypothetical protein. (425 aa)    
Predicted Functional Partners:
rho
Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.
  
 
 0.586
ACH52_1813
Peptidase C69 family.
  
     0.582
ACH52_3444
Bacterial SH3 domain-containing protein.
 
 
 0.577
ACH52_3320
Hypothetical protein.
  
     0.559
ACH52_0213
Type VII secretion protein EssC.
  
 
 0.553
ACH52_3707
Hypothetical protein.
   
 
 0.534
ACH52_3517
ABC transporter permease protein.
   
 
 0.518
ACH52_2019
FtsK/SpoIIIE family protein.
  
 
 0.507
ACH52_3692
FtsK/SpoIIIE family protein.
  
 
 0.507
ACH52_3086
Hypothetical protein.
 
 
 0.490
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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