Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
ACH52_0426Type IV pilus assembly protein PilM. (515 aa)    
Predicted Functional Partners:
ACH52_0425
Type II secretion system protein F GspF.
   
 
 0.864
ACH52_0427
Hypothetical protein.
       0.806
ACH52_0423
Prepilin peptidase A24 family.
  
  
 0.639
ACH52_0415
Type II secretion system protein E GspE.
  
 
 0.611
ACH52_3358
Type II secretion system protein E GspE.
  
 
 0.611
ACH52_3357
Type II secretion system protein F GspF.
   
 
 0.523
ACH52_3584
Type II secretion system protein F GspF.
   
 
 0.523
ACH52_0384
Two component system histidine kinase/response regulator hybrid protein.
  
  
 0.506
ACH52_0424
Four helix bundle protein.
       0.503
ACH52_0422
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
  
  
 0.434
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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