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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACH52_0474Microcompartment protein PduA. (91 aa)    
Predicted Functional Partners:
ACH52_0485
Microcompartment protein PduN.
 
 
 0.990
ACH52_0490
Microcompartment protein PduT.
 
  
 0.893
ACH52_0487
Propionaldehyde dehydrogenase PduP.
 
  
 0.880
ACH52_0483
Propanediol utilization protein.
 
  
 0.859
ACH52_0475
Microcompartment protein PduB.
 
  
 0.843
ACH52_0482
Propanediol utilization protein PduL; Involved in 1,2-propanediol (1,2-PD) degradation by catalyzing the conversion of propanoyl-CoA to propanoyl-phosphate.
 
  
 0.788
ACH52_3144
Propanediol utilization protein PduU.
 
  
 0.786
ACH52_2694
Propanediol utilization polyhedral body protein PduU.
 
  
 0.771
ACH52_0249
Microcompartment protein.
 
  
 0.750
ACH52_3145
Propanediol utilization protein PduV; Belongs to the EutP/PduV family.
 
  
 0.739
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.