STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACH52_0609DeoC/LacD family aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. (239 aa)    
Predicted Functional Partners:
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.
    
 0.906
ACH52_2449
Aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family.
  
 0.870
ACH52_2633
PTS system glucose-specific IIABC component.
    
 0.860
ACH52_0605
Fructose-1,6-bisphosphate aldolase class II Fba.
    
 0.845
pgi
Glucose-6-phosphate isomerase; Belongs to the GPI family.
  
 
 0.829
ACH52_0441
Phosphoglucomutase/phosphomannomutase family protein.
  
 
 0.826
ACH52_3347
Glyceraldehyde-3-phosphate dehydrogenase Gap; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
    
 0.825
ACH52_0603
Transketolase subunit B TktB.
  
 
  0.824
ACH52_0602
Transketolase subunit A TktA.
    
 0.819
ACH52_1002
Pyruvate kinase Pyk; Belongs to the pyruvate kinase family.
    
 0.815
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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