Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ACH52_0636Leucine rich repeat-containing protein. (159 aa)    
Predicted Functional Partners:
ACH52_0635
Hypothetical protein.
 
     0.843
ACH52_0637
Leucine rich repeat-containing protein.
 
    
0.825
ACH52_0634
Cobalt ABC transporter ATP-binding protein.
 
     0.812
ACH52_0457
Cell surface protein.
  
 
   0.774
ACH52_0633
Leucine rich repeat-containing protein.
 
    
0.722
ACH52_0632
Cobalt ABC transporter permease protein.
 
     0.718
secA
Preprotein translocase subunit SecA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane.
     
 0.666
ACH52_0211
Serine/threonine protein kinase.
  
 
 0.621
ACH52_0630
Hypothetical protein.
 
     0.550
ACH52_0629
Cell surface protein.
 
 
   0.495
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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