Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ACH52_0664dTDP-4-dehydrorhamnose reductase RfbD; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose. (287 aa)    
Predicted Functional Partners:
ACH52_0665
Glucose-1-phosphate thymidylyltransferase RfbA; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
 0.999
ACH52_0666
dTDP-4-dehydrorhamnose 3,5-epimerase RfbC; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
 
 0.999
ACH52_0667
dTDP-glucose 4,6-dehydratase RfbB; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
 0.997
ACH52_1475
NAD dependent epimerase/dehydratase.
  
 
 0.942
ACH52_0677
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
 
  
 0.758
ACH52_0673
Glycosyl transferase GT2 family.
 
  
 0.750
ACH52_0669
Polysaccharide/polyol phosphate ABC transporter ATP-binding protein.
 
   
 0.714
ACH52_0672
Glycosyl transferase GT2 family.
 
  
 0.714
ACH52_0676
Glycosyl transferase GT2 family.
 
  
 0.711
ACH52_0668
Polysaccharide/polyol phosphate ABC transporter permease protein.
 
   
 0.698
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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