STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACH52_0775Hypothetical protein; Belongs to the UPF0297 family. (90 aa)    
Predicted Functional Partners:
ACH52_0777
Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
 
    0.911
ACH52_0778
Hypothetical protein; Belongs to the UPF0473 family.
  
  
 0.835
ACH52_2675
RNA polymerase sigma factor sigma-70 family; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.
 
   
 0.770
ACH52_2035
Hypothetical protein.
  
     0.766
ACH52_1450
Polysaccharide biosynthesis protein.
  
     0.757
ACH52_0721
Polysaccharide biosynthesis protein.
  
     0.753
ACH52_3899
Hypothetical protein.
  
     0.753
whiA
WhiA family transcriptional regulator; Involved in cell division and chromosome segregation.
  
     0.743
ACH52_1136
Fibronectin-binding A domain-containing protein.
  
     0.692
mrnC
Ribonuclease III family protein; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family.
  
     0.688
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.