STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACH52_0874PTS system alpha-glucoside-specific IIBC component. (515 aa)    
Predicted Functional Partners:
ACH52_3444
Bacterial SH3 domain-containing protein.
  
  
 0.993
ACH52_2633
PTS system glucose-specific IIABC component.
 
 
0.983
ACH52_0875
Glycoside hydrolase GH4 family.
  
 0.979
ACH52_3640
ROK family protein.
  
 
 0.950
ACH52_0876
RpiR family transcriptional regulator.
 
  
 0.943
ACH52_0877
RpiR family transcriptional regulator.
 
  
 0.942
ACH52_2632
PRD domain-containing protein.
 
 
 0.900
ACH52_0806
PTS system fructose-specific IIABC component.
 
  
 0.895
ACH52_0652
Glycoside hydrolase GH13 family.
  
  
 0.881
ACH52_2190
PTS system transcriptional regulator.
 
 
 0.877
Your Current Organism:
Eubacterium limosum
NCBI taxonomy Id: 1736
Other names: ATCC 8486, Bacteroides limosus, Butyribacterium limosum, Butyribacterium rettgeri, CCUG 16793, CIP 104169, DSM 20543, E. limosum, JCM 6421, JCM 9978, Mycobacterium limosum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.